git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Check seqs in group exist in this alignment
[jalview.git]
/
src
/
jalview
/
gui
/
TreeCanvas.java
diff --git
a/src/jalview/gui/TreeCanvas.java
b/src/jalview/gui/TreeCanvas.java
index
98299ab
..
f338492
100755
(executable)
--- a/
src/jalview/gui/TreeCanvas.java
+++ b/
src/jalview/gui/TreeCanvas.java
@@
-88,7
+88,6
@@
public class TreeCanvas extends JPanel implements MouseListener, Runnable,
scrollPane = scroller;
addMouseListener(this);
addMouseMotionListener(this);
scrollPane = scroller;
addMouseListener(this);
addMouseMotionListener(this);
- PaintRefresher.Register(tp, ap.av.getSequenceSetId());
ToolTipManager.sharedInstance().registerComponent(this);
}
ToolTipManager.sharedInstance().registerComponent(this);
}
@@
-239,7
+238,7
@@
public class TreeCanvas extends JPanel implements MouseListener, Runnable,
SequenceGroup selected = av.getSelectionGroup();
if ( (selected != null) &&
SequenceGroup selected = av.getSelectionGroup();
if ( (selected != null) &&
- selected.getSequences(false).contains( (SequenceI) node.element()))
+ selected.getSequences(null).contains( (SequenceI) node.element()))
{
g.setColor(Color.gray);
{
g.setColor(Color.gray);
@@
-851,7
+850,7
@@
public class TreeCanvas extends JPanel implements MouseListener, Runnable,
{
Conservation c = new Conservation("Group",
ResidueProperties.propHash, 3,
{
Conservation c = new Conservation("Group",
ResidueProperties.propHash, 3,
- sg.getSequences(false),
+ sg.getSequences(null),
sg.getStartRes(), sg.getEndRes());
c.calculate();
sg.getStartRes(), sg.getEndRes());
c.calculate();