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Custom aptx configuration added
[jalview.git]
/
src
/
jalview
/
gui
/
TreePanel.java
diff --git
a/src/jalview/gui/TreePanel.java
b/src/jalview/gui/TreePanel.java
index
67ac836
..
f1ba97b
100755
(executable)
--- a/
src/jalview/gui/TreePanel.java
+++ b/
src/jalview/gui/TreePanel.java
@@
-35,7
+35,6
@@
import jalview.datamodel.NodeTransformI;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequenceNode;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequenceNode;
-import jalview.ext.archaeopteryx.ArchaeopteryxNewickInit;
import jalview.io.JalviewFileChooser;
import jalview.io.JalviewFileView;
import jalview.io.NewickFile;
import jalview.io.JalviewFileChooser;
import jalview.io.JalviewFileView;
import jalview.io.NewickFile;
@@
-86,6
+85,8
@@
public class TreePanel extends GTreePanel
*
* @param ap
* @param tree
*
* @param ap
* @param tree
+ * @param treeType
+ * @param substitutionMatrix
*/
public TreePanel(AlignmentPanel ap, TreeModel tree, String treeType,
String substitutionMatrix)
*/
public TreePanel(AlignmentPanel ap, TreeModel tree, String treeType,
String substitutionMatrix)
@@
-108,7
+109,6
@@
public class TreePanel extends GTreePanel
* @param newtree
* @param theTitle
* @param inputData
* @param newtree
* @param theTitle
* @param inputData
- * @param viewport
*/
public TreePanel(AlignmentPanel alignPanel, NewickFile newtree,
String theTitle, AlignmentView inputData)
*/
public TreePanel(AlignmentPanel alignPanel, NewickFile newtree,
String theTitle, AlignmentView inputData)
@@
-311,8
+311,6
@@
public void buildTreeCanvas(AlignmentPanel ap) {
sortByTree_actionPerformed();
}
sortByTree_actionPerformed();
}
- ArchaeopteryxNewickInit archae = new ArchaeopteryxNewickInit(tree);
- archae.startArchaeopteryx();
}
}
}
}