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Merge branch 'bug/JAL-2791exportFilteredFeature' into merge/JAL-2791
[jalview.git]
/
src
/
jalview
/
gui
/
VamsasApplication.java
diff --git
a/src/jalview/gui/VamsasApplication.java
b/src/jalview/gui/VamsasApplication.java
index
ac72e93
..
c094b1c
100644
(file)
--- a/
src/jalview/gui/VamsasApplication.java
+++ b/
src/jalview/gui/VamsasApplication.java
@@
-484,8
+484,8
@@
public class VamsasApplication implements SelectionSource, VamsasSource
errorsDuringUpdate = true;
Cache.log.error("Exception synchronizing " + af.getTitle()
+ " "
errorsDuringUpdate = true;
Cache.log.error("Exception synchronizing " + af.getTitle()
+ " "
- + (af.getViewport().viewName == null ? ""
- : " view " + af.getViewport().viewName)
+ + (af.getViewport().getViewName() == null ? ""
+ : " view " + af.getViewport().getViewName())
+ " to document.", e);
stored = false;
}
+ " to document.", e);
stored = false;
}
@@
-1076,7
+1076,7
@@
public class VamsasApplication implements SelectionSource, VamsasSource
{
Iterator<int[]> intervals = hidden
.getVisContigsIterator(seqsel.getStartRes(),
{
Iterator<int[]> intervals = hidden
.getVisContigsIterator(seqsel.getStartRes(),
- seqsel.getEndRes() + 1);
+ seqsel.getEndRes() + 1, false);
while (intervals.hasNext())
{
int[] region = intervals.next();
while (intervals.hasNext())
{
int[] region = intervals.next();