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JAL-3664 hmm related TODOs
[jalview.git]
/
src
/
jalview
/
hmmer
/
HMMBuild.java
diff --git
a/src/jalview/hmmer/HMMBuild.java
b/src/jalview/hmmer/HMMBuild.java
index
0c47c1d
..
0bda090
100644
(file)
--- a/
src/jalview/hmmer/HMMBuild.java
+++ b/
src/jalview/hmmer/HMMBuild.java
@@
-201,6
+201,7
@@
public class HMMBuild extends HmmerCommand
// at import level ?
SequenceI[] copyArray = copy.toArray(new SequenceI[copy.size()]);
// at import level ?
SequenceI[] copyArray = copy.toArray(new SequenceI[copy.size()]);
+ // TODO: when copy contains the alignment sequences, you actually see the alignment sequences change to 'Sequence0'... if a redraw occurs!
Hashtable sequencesHash = stashSequences(copyArray);
exportStockholm(copyArray, alignmentFile, ac);
Hashtable sequencesHash = stashSequences(copyArray);
exportStockholm(copyArray, alignmentFile, ac);