- alignment.setHmmConsensus(hmmSeq);
- }
-
- AlignViewport viewport = af.getViewport();
- if (viewport != null)
- {
- AlignmentPanel alignPanel = viewport.getAlignPanel();
- viewport.alignmentChanged(alignPanel);
- alignPanel.adjustAnnotationHeight();
- viewport.updateSequenceIdColours();
-
- if (alignPanel.alignFrame.getSelectedHMM() == null)
- {
- alignPanel.alignFrame.setSelectedHMMSequence(hmmSeq);
- }