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Merge branch 'develop' into update_212_Dec_merge_with_21125_chamges
[jalview.git]
/
src
/
jalview
/
hmmer
/
JackHMMER.java
diff --git
a/src/jalview/hmmer/JackHMMER.java
b/src/jalview/hmmer/JackHMMER.java
index
12c0492
..
00314f0
100644
(file)
--- a/
src/jalview/hmmer/JackHMMER.java
+++ b/
src/jalview/hmmer/JackHMMER.java
@@
-1,6
+1,7
@@
package jalview.hmmer;
import jalview.bin.Cache;
package jalview.hmmer;
import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
@@
-51,7
+52,7
@@
public class JackHMMER extends Search
if (seq == null)
{
// shouldn't happen if we got this far
if (seq == null)
{
// shouldn't happen if we got this far
- Cache.log.error("Error: no sequence for jackhmmer");
+ Console.error("Error: no sequence for jackhmmer");
return;
}
return;
}