+ /*
+ void readOutputFile(File inputTableTemp) throws IOException
+ {
+ BufferedReader br = new BufferedReader(new FileReader(inputTableTemp));
+
+
+ String line = "";
+ while (!line.startsWith("//"))
+ {
+
+ while (!line.startsWith(">> ") && !line.startsWith("//"))
+ {
+ line = br.readLine();
+ }
+
+ if (line.startsWith("//"))
+ {
+ break;
+ }
+
+ Scanner scanner = new Scanner(line);
+ String name = scanner.next();
+ name = scanner.next();
+
+ br.readLine();
+ br.readLine();
+
+ List<SequenceI> domains = new ArrayList<>();
+
+ for (SequenceI seq : seqs)
+ {
+ if (seq.getName().contains(name))
+ {
+ domains.add(seq);
+ }
+ }
+
+ if (domains.contains(getSequence()))
+ {
+ domains.remove(getSequence());
+ }
+
+ if (domains.size() > 0)
+ {
+ readOutputTable(br, domains);
+ }
+
+ line = br.readLine();
+ }
+
+ }
+
+