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close filehandles straight after parse, without setting an error
[jalview.git]
/
src
/
jalview
/
io
/
AlignFile.java
diff --git
a/src/jalview/io/AlignFile.java
b/src/jalview/io/AlignFile.java
index
497f0a5
..
338c4b2
100755
(executable)
--- a/
src/jalview/io/AlignFile.java
+++ b/
src/jalview/io/AlignFile.java
@@
-20,13
+20,6
@@
*/
package jalview.io;
*/
package jalview.io;
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.Sequence;
-import jalview.datamodel.SequenceGroup;
-import jalview.datamodel.SequenceI;
-import jalview.util.MessageManager;
-
import java.io.IOException;
import java.util.ArrayList;
import java.util.Enumeration;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Enumeration;
@@
-34,6
+27,13
@@
import java.util.Hashtable;
import java.util.List;
import java.util.Vector;
import java.util.List;
import java.util.Vector;
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
+import jalview.util.MessageManager;
+
/**
* DOCUMENT ME!
*
/**
* DOCUMENT ME!
*
@@
-192,6
+192,7
@@
public abstract class AlignFile extends FileParse
}
parseCalled = true;
parse();
}
parseCalled = true;
parse();
+ dataIn.close();
}
/**
}
/**