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currentSeq and set description in dataset
[jalview.git]
/
src
/
jalview
/
io
/
AlignFile.java
diff --git
a/src/jalview/io/AlignFile.java
b/src/jalview/io/AlignFile.java
index
1dafb91
..
0691d82
100755
(executable)
--- a/
src/jalview/io/AlignFile.java
+++ b/
src/jalview/io/AlignFile.java
@@
-1,6
+1,6
@@
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer
\r
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer
\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
*
\r
* This program is free software; you can redistribute it and/or
\r
* modify it under the terms of the GNU General Public License
\r
*
\r
* This program is free software; you can redistribute it and/or
\r
* modify it under the terms of the GNU General Public License
\r
@@
-114,8
+114,7
@@
public abstract class AlignFile extends FileParse
protected boolean isValidProteinSequence(String sequence)
\r
{
\r
for (int i = 0; i < sequence.length(); i++)
\r
protected boolean isValidProteinSequence(String sequence)
\r
{
\r
for (int i = 0; i < sequence.length(); i++)
\r
- if (!jalview.schemes.ResidueProperties.aaHash.containsKey(
\r
- String.valueOf(sequence.charAt(i))))
\r
+ if (jalview.schemes.ResidueProperties.aaIndex[sequence.charAt(i)]==-1)
\r
{
\r
invalidCharacter = sequence.charAt(i);
\r
return false;
\r
{
\r
invalidCharacter = sequence.charAt(i);
\r
return false;
\r