- // Checks whether sequence is valid aa characters\r
- protected boolean isValidProteinSequence(String sequence)\r
- {\r
- for (int i = 0; i < sequence.length(); i++)\r
- if (jalview.schemes.ResidueProperties.aaIndex[sequence.charAt(i)]==-1)\r
- {\r
- invalidCharacter = sequence.charAt(i);\r
- return false;\r
- }\r
-\r
- return true;\r
- }\r