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Dont add pdb format here
[jalview.git]
/
src
/
jalview
/
io
/
AlignFile.java
diff --git
a/src/jalview/io/AlignFile.java
b/src/jalview/io/AlignFile.java
index
f933961
..
ceec54b
100755
(executable)
--- a/
src/jalview/io/AlignFile.java
+++ b/
src/jalview/io/AlignFile.java
@@
-135,12
+135,15
@@
public abstract class AlignFile extends FileParse
if (!jalview.schemes.ResidueProperties.aaHash.containsKey(
\r
String.valueOf(sequence.charAt(i))))
\r
{
\r
if (!jalview.schemes.ResidueProperties.aaHash.containsKey(
\r
String.valueOf(sequence.charAt(i))))
\r
{
\r
+ invalidCharacter = sequence.charAt(i);
\r
return false;
\r
}
\r
\r
return true;
\r
}
\r
\r
return false;
\r
}
\r
\r
return true;
\r
}
\r
\r
+ char invalidCharacter;
\r
+
\r
/**
\r
* This method must be implemented to parse the contents of the file.
\r
*/
\r
/**
\r
* This method must be implemented to parse the contents of the file.
\r
*/
\r