- System.out.println("Last read line " + nlinesread + ": '" + lastread
- + "' (first 80 chars) ...");
+ jalview.bin.Console.outPrintln("Last read line " + nlinesread
+ + ": '" + lastread + "' (first 80 chars) ...");
- System.err.println("line " + nlinesread + ": Threshold '" + nextToken
- + "' invalid, setting to zero");
+ jalview.bin.Console.errPrintln("line " + nlinesread + ": Threshold '"
+ + nextToken + "' invalid, setting to zero");
"Couldn't parse Group Start or End Field as '*' or a valid column or sequence index: '"
+ rng + "' - assuming alignment width for group.");
// assume group is full width
"Couldn't parse Group Start or End Field as '*' or a valid column or sequence index: '"
+ rng + "' - assuming alignment width for group.");
// assume group is full width