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added description of alignment quality scores and separated
[jalview.git]
/
src
/
jalview
/
io
/
AppletFormatAdapter.java
diff --git
a/src/jalview/io/AppletFormatAdapter.java
b/src/jalview/io/AppletFormatAdapter.java
index
dca2d0c
..
5f73898
100755
(executable)
--- a/
src/jalview/io/AppletFormatAdapter.java
+++ b/
src/jalview/io/AppletFormatAdapter.java
@@
-50,6
+50,12
@@
formats.addElement("PFAM");
\r
}
\r
\r
formats.addElement("PFAM");
\r
}
\r
\r
+
\r
+ public static String FILE = "File";
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+ public static String URL = "URL";
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+ public static String PASTE = "Paste";
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+ public static String CLASSLOADER = "ClassLoader";
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+
\r
AlignFile afile = null;
\r
\r
/**
\r
AlignFile afile = null;
\r
\r
/**
\r
@@
-95,6
+101,7
@@
afile = new PfamFile(inFile, type);
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}
\r
\r
afile = new PfamFile(inFile, type);
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}
\r
\r
+
\r
return afile.getSeqsAsArray();
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}
\r
catch (Exception e)
\r
return afile.getSeqsAsArray();
\r
}
\r
catch (Exception e)
\r