String afileresp = afile.print(seqs, jvsuffix);
if (afile.hasWarningMessage())
{
String afileresp = afile.print(seqs, jvsuffix);
if (afile.hasWarningMessage())
{
- System.err.println("Warning raised when writing as " + format
- + " : " + afile.getWarningMessage());
+ jalview.bin.Console.errPrintln("Warning raised when writing as "
+ + format + " : " + afile.getWarningMessage());
- System.out.println("Alignment contains " + al.getHeight()
- + " sequences and " + al.getWidth() + " columns.");
+ jalview.bin.Console.outPrintln("Alignment contains "
+ + al.getHeight() + " sequences and " + al.getWidth()
+ + " columns.");
- System.err.println("Ignoring argument '" + args[i] + "' (" + i
- + "'th)- not a readable file.");
+ jalview.bin.Console.errPrintln("Ignoring argument '" + args[i]
+ + "' (" + i + "'th)- not a readable file.");
"Trying to get contents of resource as " + protocol + ":");
}
fp = new FileParse(file, protocol);
"Trying to get contents of resource as " + protocol + ":");
}
fp = new FileParse(file, protocol);