import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JmolParser;
import jalview.structure.StructureImportSettings;
import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JmolParser;
import jalview.structure.StructureImportSettings;
.toString());
StructureImportSettings.addSettings(annotFromStructure,
localSecondaryStruct, serviceSecondaryStruct);
.toString());
StructureImportSettings.addSettings(annotFromStructure,
localSecondaryStruct, serviceSecondaryStruct);
if (isParseWithJMOL)
{
// needs a File option
alignFile = new JmolParser(
selectedFile == null ? inFile : selectedFile, sourceType,
if (isParseWithJMOL)
{
// needs a File option
alignFile = new JmolParser(
selectedFile == null ? inFile : selectedFile, sourceType,