git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-2361 option to save on OK of changed named colour scheme
[jalview.git]
/
src
/
jalview
/
io
/
AppletFormatAdapter.java
diff --git
a/src/jalview/io/AppletFormatAdapter.java
b/src/jalview/io/AppletFormatAdapter.java
index
1bb7ba3
..
c5a80e3
100755
(executable)
--- a/
src/jalview/io/AppletFormatAdapter.java
+++ b/
src/jalview/io/AppletFormatAdapter.java
@@
-64,7
+64,7
@@
public class AppletFormatAdapter
*/
boolean serviceSecondaryStruct = false;
*/
boolean serviceSecondaryStruct = false;
- private AlignmentFileI alignFile = null;
+ private AlignmentFileReaderI alignFile = null;
String inFile;
String inFile;
@@
-370,7
+370,7
@@
public class AppletFormatAdapter
{
try
{
{
try
{
- AlignmentFileI afile = format.getWriter(alignment);
+ AlignmentFileWriterI afile = format.getWriter(alignment);
afile.setNewlineString(newline);
afile.setExportSettings(exportSettings);
afile.setNewlineString(newline);
afile.setExportSettings(exportSettings);
@@
-648,7
+648,7
@@
public class AppletFormatAdapter
return null;
}
return null;
}
- public AlignmentFileI getAlignFile()
+ public AlignmentFileReaderI getAlignFile()
{
return alignFile;
}
{
return alignFile;
}