git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-1270 JUnit to TestNG refactoring
[jalview.git]
/
src
/
jalview
/
io
/
BLCFile.java
diff --git
a/src/jalview/io/BLCFile.java
b/src/jalview/io/BLCFile.java
index
0376c2c
..
c7cf2d6
100755
(executable)
--- a/
src/jalview/io/BLCFile.java
+++ b/
src/jalview/io/BLCFile.java
@@
-20,10
+20,11
@@
*/
package jalview.io;
*/
package jalview.io;
-import java.io.*;
-import java.util.*;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceI;
-import jalview.datamodel.*;
+import java.io.IOException;
+import java.util.Vector;
/**
* DOCUMENT ME!
/**
* DOCUMENT ME!
@@
-115,7
+116,9
@@
public class BLCFile extends AlignFile
{
line = nextLine();
if (line == null)
{
line = nextLine();
if (line == null)
+ {
break;
break;
+ }
// seek end of ids
if (line.indexOf("*") > -1)
{
// seek end of ids
if (line.indexOf("*") > -1)
{
@@
-150,7
+153,9
@@
public class BLCFile extends AlignFile
}
} while (!idsFound);
if (line == null)
}
} while (!idsFound);
if (line == null)
+ {
break; // end of file.
break; // end of file.
+ }
int starCol = line.indexOf("*");
seqstrings = new StringBuffer[seqs.size()];
int starCol = line.indexOf("*");
seqstrings = new StringBuffer[seqs.size()];
@@
-198,9
+203,11
@@
public class BLCFile extends AlignFile
}
if (seqs.size() > 0)
{
}
if (seqs.size() > 0)
{
- if (headerLines.length() > 1 + numHeaderLines) // could see if buffer is
+ if (headerLines.length() > 1 + numHeaderLines)
+ {
// just whitespace or not.
setAlignmentProperty("Comments", headerLines.toString());
// just whitespace or not.
setAlignmentProperty("Comments", headerLines.toString());
+ }
setAlignmentProperty("iteration", "" + iterationCount);
}
}
setAlignmentProperty("iteration", "" + iterationCount);
}
}