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file format enum wip changes
[jalview.git]
/
src
/
jalview
/
io
/
BLCFile.java
diff --git
a/src/jalview/io/BLCFile.java
b/src/jalview/io/BLCFile.java
index
c7cf2d6
..
c0ecd58
100755
(executable)
--- a/
src/jalview/io/BLCFile.java
+++ b/
src/jalview/io/BLCFile.java
@@
-48,15
+48,16
@@
public class BLCFile extends AlignFile
*
* @param inFile
* DOCUMENT ME!
*
* @param inFile
* DOCUMENT ME!
- * @param type
+ * @param sourceType
* DOCUMENT ME!
*
* @throws IOException
* DOCUMENT ME!
*/
* DOCUMENT ME!
*
* @throws IOException
* DOCUMENT ME!
*/
- public BLCFile(String inFile, String type) throws IOException
+ public BLCFile(String inFile, DataSourceType sourceType)
+ throws IOException
{
{
- super(inFile, type);
+ super(inFile, sourceType);
}
public BLCFile(FileParse source) throws IOException
}
public BLCFile(FileParse source) throws IOException
@@
-67,6
+68,7
@@
public class BLCFile extends AlignFile
/**
* DOCUMENT ME!
*/
/**
* DOCUMENT ME!
*/
+ @Override
public void initData()
{
super.initData();
public void initData()
{
super.initData();
@@
-89,6
+91,7
@@
public class BLCFile extends AlignFile
/**
* DOCUMENT ME!
*/
/**
* DOCUMENT ME!
*/
+ @Override
public void parse() throws IOException
{
StringBuffer headerLines = new StringBuffer();
public void parse() throws IOException
{
StringBuffer headerLines = new StringBuffer();
@@
-153,7
+156,7
@@
public class BLCFile extends AlignFile
}
} while (!idsFound);
if (line == null)
}
} while (!idsFound);
if (line == null)
- {
+ {
break; // end of file.
}
int starCol = line.indexOf("*");
break; // end of file.
}
int starCol = line.indexOf("*");
@@
-217,6
+220,7
@@
public class BLCFile extends AlignFile
*
* @return DOCUMENT ME!
*/
*
* @return DOCUMENT ME!
*/
+ @Override
public String print()
{
return print(getSeqsAsArray());
public String print()
{
return print(getSeqsAsArray());