git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
file format enum wip changes
[jalview.git]
/
src
/
jalview
/
io
/
BioJsHTMLOutput.java
diff --git
a/src/jalview/io/BioJsHTMLOutput.java
b/src/jalview/io/BioJsHTMLOutput.java
index
f8fa1f5
..
0ebebc2
100644
(file)
--- a/
src/jalview/io/BioJsHTMLOutput.java
+++ b/
src/jalview/io/BioJsHTMLOutput.java
@@
-24,6
+24,7
@@
import jalview.api.AlignExportSettingI;
import jalview.api.AlignmentViewPanel;
import jalview.datamodel.AlignmentExportData;
import jalview.exceptions.NoFileSelectedException;
import jalview.api.AlignmentViewPanel;
import jalview.datamodel.AlignmentExportData;
import jalview.exceptions.NoFileSelectedException;
+import jalview.gui.AlignFrame;
import jalview.gui.IProgressIndicator;
import jalview.gui.OOMWarning;
import jalview.json.binding.biojs.BioJSReleasePojo;
import jalview.gui.IProgressIndicator;
import jalview.gui.OOMWarning;
import jalview.json.binding.biojs.BioJSReleasePojo;
@@
-125,11
+126,11
@@
public class BioJsHTMLOutput
}
};
}
};
- AlignmentExportData exportData = jalview.gui.AlignFrame
- .getAlignmentForExport(JSONFile.FILE_DESC,
+ AlignmentExportData exportData = AlignFrame
+ .getAlignmentForExport(FileFormat.Json,
ap.getAlignViewport(), exportSettings);
String bioJSON = new FormatAdapter(ap, exportData.getSettings())
ap.getAlignViewport(), exportSettings);
String bioJSON = new FormatAdapter(ap, exportData.getSettings())
- .formatSequences(JSONFile.FILE_DESC, exportData
+ .formatSequences(FileFormat.Json, exportData
.getAlignment(), exportData.getOmitHidden(),
exportData.getStartEndPostions(), ap
.getAlignViewport().getColumnSelection());
.getAlignment(), exportData.getOmitHidden(),
exportData.getStartEndPostions(), ap
.getAlignViewport().getColumnSelection());