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documentation and targets for building a working applet examples
[jalview.git]
/
src
/
jalview
/
io
/
ClustalFile.java
diff --git
a/src/jalview/io/ClustalFile.java
b/src/jalview/io/ClustalFile.java
index
4973908
..
7e22f3d
100755
(executable)
--- a/
src/jalview/io/ClustalFile.java
+++ b/
src/jalview/io/ClustalFile.java
@@
-149,7
+149,7
@@
public class ClustalFile extends AlignFile
public String print(SequenceI[] s)
{
public String print(SequenceI[] s)
{
- StringBuffer out = new StringBuffer("CLUSTAL\n\n");
+ StringBuffer out = new StringBuffer("CLUSTAL"+newline+newline);
int max = 0;
int maxid = 0;
int max = 0;
int maxid = 0;
@@
-189,9
+189,7
@@
public class ClustalFile extends AlignFile
while ((j < s.length) && (s[j] != null))
{
while ((j < s.length) && (s[j] != null))
{
- out
- .append(new Format("%-" + maxid + "s").form(printId(s[j])
- + " "));
+ out.append(new Format("%-" + maxid + "s").form(printId(s[j]) + " "));
int start = i * len;
int end = start + len;
int start = i * len;
int end = start + len;
@@
-209,11
+207,11
@@
public class ClustalFile extends AlignFile
}
}
}
}
- out.append("\n");
+ out.append(newline);
j++;
}
j++;
}
- out.append("\n");
+ out.append(newline);
}
return out.toString();
}
return out.toString();