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Merge branch 'develop' into releases/Release_2_10_Branch
[jalview.git]
/
src
/
jalview
/
io
/
ClustalFile.java
diff --git
a/src/jalview/io/ClustalFile.java
b/src/jalview/io/ClustalFile.java
index
a9295a3
..
f7a45de
100755
(executable)
--- a/
src/jalview/io/ClustalFile.java
+++ b/
src/jalview/io/ClustalFile.java
@@
-47,11
+47,13
@@
public class ClustalFile extends AlignFile
super(source);
}
super(source);
}
+ @Override
public void initData()
{
super.initData();
}
public void initData()
{
super.initData();
}
+ @Override
public void parse() throws IOException
{
int i = 0;
public void parse() throws IOException
{
int i = 0;
@@
-193,6
+195,7
@@
public class ClustalFile extends AlignFile
}
}
}
}
+ @Override
public String print()
{
return print(getSeqsAsArray());
public String print()
{
return print(getSeqsAsArray());
@@
-233,7
+236,7
@@
public class ClustalFile extends AlignFile
maxid++;
int len = 60;
maxid++;
int len = 60;
- int nochunks = (max / len) + 1;
+ int nochunks = (max / len) + (max % len > 0 ? 1 : 0);
for (i = 0; i < nochunks; i++)
{
for (i = 0; i < nochunks; i++)
{