- void promptBeforeBlast()\r
- {\r
- // This must be outside the run() body as java 1.5\r
- // will not return any value from the OptionPane to the expired thread.\r
- if (unknownSequences.size() > 0)\r
- {\r
- // int reply = javax.swing.JOptionPane.showConfirmDialog(\r
- // Desktop.desktop, "Couldn't find a match for "+unknownSequences.size()+" sequences."\r
- // +"\nPerform blast for unknown sequences?",\r
- // "Blast for Unidentified Sequences",\r
- // javax.swing.JOptionPane.YES_NO_OPTION, javax.swing.JOptionPane.QUESTION_MESSAGE);\r
- javax.swing.JOptionPane.showMessageDialog(\r
- Desktop.desktop, "Couldn't find a match for "+unknownSequences.size()+" sequences.",\r
- "Unidentified Sequences",\r
- javax.swing.JOptionPane.WARNING_MESSAGE);\r
-\r
-\r
- // if(reply == javax.swing.JOptionPane.YES_OPTION)\r
- // new WSWUBlastClient(ap, align, unknownSequences);\r
- }\r
- }\r
-\r