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currentSeq and set description in dataset
[jalview.git]
/
src
/
jalview
/
io
/
DBRefFetcher.java
diff --git
a/src/jalview/io/DBRefFetcher.java
b/src/jalview/io/DBRefFetcher.java
index
23e5bf6
..
d57f3be
100644
(file)
--- a/
src/jalview/io/DBRefFetcher.java
+++ b/
src/jalview/io/DBRefFetcher.java
@@
-1,6
+1,6
@@
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer
\r
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer
\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
*
\r
* This program is free software; you can redistribute it and/or
\r
* modify it under the terms of the GNU General Public License
\r
*
\r
* This program is free software; you can redistribute it and/or
\r
* modify it under the terms of the GNU General Public License
\r
@@
-292,7
+292,7
@@
public class DBRefFetcher implements Runnable
System.out.println("Adding dbref to "+sequence[m].getName()+" : "+
\r
entry.getAccession().elementAt(0).toString());
\r
\r
System.out.println("Adding dbref to "+sequence[m].getName()+" : "+
\r
entry.getAccession().elementAt(0).toString());
\r
\r
- String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence());
\r
+ String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence()).toUpperCase();
\r
\r
int absStart = entry.getUniprotSequence().getContent().indexOf(
\r
nonGapped.toString());
\r
\r
int absStart = entry.getUniprotSequence().getContent().indexOf(
\r
nonGapped.toString());
\r