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JAL-3933 remove obsolete Castor logging configuration
[jalview.git]
/
src
/
jalview
/
io
/
EmblFlatFile.java
diff --git
a/src/jalview/io/EmblFlatFile.java
b/src/jalview/io/EmblFlatFile.java
index
bfae4ed
..
21e66d2
100644
(file)
--- a/
src/jalview/io/EmblFlatFile.java
+++ b/
src/jalview/io/EmblFlatFile.java
@@
-841,11
+841,9
@@
public class EmblFlatFile extends AlignFile // FileParse
int exonLength = MappingUtils.getLength(Arrays.asList(exon));
/*
int exonLength = MappingUtils.getLength(Arrays.asList(exon));
/*
- * if exon length matches protein, or is shorter, or longer by the
- * length of a stop codon (3 bases), then leave it unchanged
+ * if exon length matches protein, or is shorter, then leave it unchanged
*/
*/
- if (expectedCdsLength >= exonLength
- || expectedCdsLength == exonLength - 3)
+ if (expectedCdsLength >= exonLength)
{
return exon;
}
{
return exon;
}