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JAL-2049 separate protein variant per dna variant (combinations tbd)
[jalview.git]
/
src
/
jalview
/
io
/
FeaturesFile.java
diff --git
a/src/jalview/io/FeaturesFile.java
b/src/jalview/io/FeaturesFile.java
index
2d91a08
..
2dd5f26
100755
(executable)
--- a/
src/jalview/io/FeaturesFile.java
+++ b/
src/jalview/io/FeaturesFile.java
@@
-74,8
+74,6
@@
public class FeaturesFile extends AlignFile implements FeaturesSourceI
private static final String NOTE = "Note";
private static final String NOTE = "Note";
- protected static final String FRAME = "FRAME";
-
protected static final String TAB = "\t";
protected static final String GFF_VERSION = "##gff-version";
protected static final String TAB = "\t";
protected static final String GFF_VERSION = "##gff-version";
@@
-1078,7
+1076,8
@@
public class FeaturesFile extends AlignFile implements FeaturesSourceI
out.append(strand == 1 ? "+" : (strand == -1 ? "-" : "."));
out.append(TAB);
out.append(strand == 1 ? "+" : (strand == -1 ? "-" : "."));
out.append(TAB);
- out.append(sf.getValue(FRAME, "."));
+ String phase = sf.getPhase();
+ out.append(phase == null ? "." : phase);
// miscellaneous key-values (GFF column 9)
String attributes = sf.getAttributes();
// miscellaneous key-values (GFF column 9)
String attributes = sf.getAttributes();