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JAL-1443 bug fix for loading pasted alignments from clipboard via the file loader
[jalview.git]
/
src
/
jalview
/
io
/
FeaturesFile.java
diff --git
a/src/jalview/io/FeaturesFile.java
b/src/jalview/io/FeaturesFile.java
index
44af9ad
..
fbe871b
100755
(executable)
--- a/
src/jalview/io/FeaturesFile.java
+++ b/
src/jalview/io/FeaturesFile.java
@@
-22,7
+22,6
@@
package jalview.io;
import jalview.analysis.SequenceIdMatcher;
import jalview.datamodel.AlignedCodonFrame;
import jalview.analysis.SequenceIdMatcher;
import jalview.datamodel.AlignedCodonFrame;
-import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceDummy;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceDummy;
import jalview.datamodel.SequenceFeature;
@@
-171,14
+170,14
@@
public class FeaturesFile extends AlignFile
}
@Override
}
@Override
- public void addAnnotations(Alignment al)
+ public void addAnnotations(AlignmentI al)
{
// TODO Auto-generated method stub
super.addAnnotations(al);
}
@Override
{
// TODO Auto-generated method stub
super.addAnnotations(al);
}
@Override
- public void addProperties(Alignment al)
+ public void addProperties(AlignmentI al)
{
// TODO Auto-generated method stub
super.addProperties(al);
{
// TODO Auto-generated method stub
super.addProperties(al);
@@
-1385,7
+1384,7
@@
public class FeaturesFile extends AlignFile
out.append(next[j].end);
out.append("\t");
out.append(next[j].type);
out.append(next[j].end);
out.append("\t");
out.append(next[j].type);
- if (next[j].score != Float.NaN)
+ if (!Float.isNaN(next[j].score))
{
out.append("\t");
out.append(next[j].score);
{
out.append("\t");
out.append(next[j].score);