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JAL-1443 bug fix for loading pasted alignments from clipboard via the file loader
[jalview.git]
/
src
/
jalview
/
io
/
FileLoader.java
diff --git
a/src/jalview/io/FileLoader.java
b/src/jalview/io/FileLoader.java
index
0705422
..
870d438
100755
(executable)
--- a/
src/jalview/io/FileLoader.java
+++ b/
src/jalview/io/FileLoader.java
@@
-337,7
+337,7
@@
public class FileLoader implements Runnable
}
}
}
}
- if ((al != null) && (al.getHeight() > 0))
+ if ((al != null) && (al.getHeight() > 0) && al.hasValidSequence())
{
// construct and register dataset sequences
for (SequenceI sq : al.getSequences())
{
// construct and register dataset sequences
for (SequenceI sq : al.getSequences())
@@
-346,9
+346,9
@@
public class FileLoader implements Runnable
{
sq = sq.getDatasetSequence();
}
{
sq = sq.getDatasetSequence();
}
- if (sq.getPDBId() != null)
+ if (sq.getAllPDBEntries() != null)
{
{
- for (PDBEntry pdbe : sq.getPDBId())
+ for (PDBEntry pdbe : sq.getAllPDBEntries())
{
// register PDB entries with desktop's structure selection
// manager
{
// register PDB entries with desktop's structure selection
// manager