afile.addJVSuffix(\r
jalview.bin.Cache.getDefault("PILEUP_JVSUFFIX", true));\r
}\r
else if (format.equalsIgnoreCase("CLUSTAL"))\r
{\r
afile = new ClustalFile();\r
afile.addJVSuffix(\r
jalview.bin.Cache.getDefault("PILEUP_JVSUFFIX", true));\r
}\r
else if (format.equalsIgnoreCase("CLUSTAL"))\r
{\r
afile = new ClustalFile();\r