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[jalview.git]
/
src
/
jalview
/
io
/
FormatAdapter.java
diff --git
a/src/jalview/io/FormatAdapter.java
b/src/jalview/io/FormatAdapter.java
index
84940a8
..
2901969
100755
(executable)
--- a/
src/jalview/io/FormatAdapter.java
+++ b/
src/jalview/io/FormatAdapter.java
@@
-36,10
+36,13
@@
public class FormatAdapter extends AppletFormatAdapter
{
\r
if(omitHiddenColumns!=null)
\r
{
\r
{
\r
if(omitHiddenColumns!=null)
\r
{
\r
+ SequenceI [] tmp = new SequenceI[seqs.length];
\r
for(int i=0; i<seqs.length; i++)
\r
for(int i=0; i<seqs.length; i++)
\r
- seqs [i] = new Sequence(
\r
+ tmp [i] = new Sequence(
\r
seqs[i].getName(), omitHiddenColumns[i],
\r
seqs[i].getStart(), seqs[i].getEnd());
\r
seqs[i].getName(), omitHiddenColumns[i],
\r
seqs[i].getStart(), seqs[i].getEnd());
\r
+
\r
+ seqs = tmp;
\r
}
\r
\r
return formatSequences(format, seqs);
\r
}
\r
\r
return formatSequences(format, seqs);
\r