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Moved comment so it doesn't break jalopy (this is not good!)
[jalview.git]
/
src
/
jalview
/
io
/
FormatAdapter.java
diff --git
a/src/jalview/io/FormatAdapter.java
b/src/jalview/io/FormatAdapter.java
index
dba0c61
..
3e5e250
100755
(executable)
--- a/
src/jalview/io/FormatAdapter.java
+++ b/
src/jalview/io/FormatAdapter.java
@@
-9,6
+9,7
@@
public class FormatAdapter
static{
\r
formats.addElement("FASTA");
\r
formats.addElement("MSF");
\r
static{
\r
formats.addElement("FASTA");
\r
formats.addElement("MSF");
\r
+ formats.addElement("PileUp");
\r
formats.addElement("CLUSTAL");
\r
formats.addElement("BLC");
\r
formats.addElement("PIR");
\r
formats.addElement("CLUSTAL");
\r
formats.addElement("BLC");
\r
formats.addElement("PIR");
\r
@@
-25,6
+26,8
@@
public class FormatAdapter
afile = new FastaFile(inFile, type);
\r
else if (format.equals("MSF"))
\r
afile = new MSFfile(inFile, type);
\r
afile = new FastaFile(inFile, type);
\r
else if (format.equals("MSF"))
\r
afile = new MSFfile(inFile, type);
\r
+ else if (format.equals("PileUp"))
\r
+ afile = new PileUpfile(inFile, type);
\r
else if (format.equals("CLUSTAL"))
\r
afile = new ClustalFile(inFile, type);
\r
else if (format.equals("BLC"))
\r
else if (format.equals("CLUSTAL"))
\r
afile = new ClustalFile(inFile, type);
\r
else if (format.equals("BLC"))
\r
@@
-59,6
+62,8
@@
public class FormatAdapter
afile = new FastaFile();
\r
else if (format.equals("MSF"))
\r
afile = new MSFfile();
\r
afile = new FastaFile();
\r
else if (format.equals("MSF"))
\r
afile = new MSFfile();
\r
+ else if (format.equals("PileUp"))
\r
+ afile = new PileUpfile();
\r
else if (format.equals("CLUSTAL"))
\r
afile = new ClustalFile();
\r
else if (format.equals("BLC"))
\r
else if (format.equals("CLUSTAL"))
\r
afile = new ClustalFile();
\r
else if (format.equals("BLC"))
\r