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JAL-1486 off-by-one error bugfix
[jalview.git]
/
src
/
jalview
/
io
/
FormatAdapter.java
diff --git
a/src/jalview/io/FormatAdapter.java
b/src/jalview/io/FormatAdapter.java
index
ebca31b
..
4ec077f
100755
(executable)
--- a/
src/jalview/io/FormatAdapter.java
+++ b/
src/jalview/io/FormatAdapter.java
@@
-107,7
+107,6
@@
public class FormatAdapter extends AppletFormatAdapter
{
startRes = seqs[i].getStart();
endRes = seqs[i].getEnd();
{
startRes = seqs[i].getStart();
endRes = seqs[i].getEnd();
-
if (startEnd != null)
{
startIndex = startEnd[0];
if (startEnd != null)
{
startIndex = startEnd[0];
@@
-127,9
+126,7
@@
public class FormatAdapter extends AppletFormatAdapter
}
startRes = seqs[i].findPosition(startIndex);
}
startRes = seqs[i].findPosition(startIndex);
- startRes = seqs[i].getStart() > 1 ? startRes - seqs[i].getStart()
- : startRes;
- endRes = seqs[i].findPosition(endIndex) - seqs[i].getStart();
+ endRes = seqs[i].findPosition(endIndex);
}
tmp[i] = new Sequence(seqs[i].getName(), omitHiddenColumns[i],
}
tmp[i] = new Sequence(seqs[i].getName(), omitHiddenColumns[i],