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send rotCanvas sequence and viewport
[jalview.git]
/
src
/
jalview
/
io
/
HTMLOutput.java
diff --git
a/src/jalview/io/HTMLOutput.java
b/src/jalview/io/HTMLOutput.java
index
af894e0
..
fd51823
100755
(executable)
--- a/
src/jalview/io/HTMLOutput.java
+++ b/
src/jalview/io/HTMLOutput.java
@@
-19,7
+19,9
@@
public class HTMLOutput
{
\r
this.av = av;
\r
sr = new SequenceRenderer(av);
\r
{
\r
this.av = av;
\r
sr = new SequenceRenderer(av);
\r
- JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
\r
+ JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY")
\r
+ , new String[]{"html"}, "HTML files");
\r
+
\r
chooser.setFileView(new JalviewFileView());
\r
chooser.setDialogTitle("Save as HTML");
\r
chooser.setToolTipText("Save");
\r
chooser.setFileView(new JalviewFileView());
\r
chooser.setDialogTitle("Save as HTML");
\r
chooser.setToolTipText("Save");
\r
@@
-90,7
+92,11
@@
public class HTMLOutput
{
\r
seq = alignment.getSequenceAt(i);
\r
groups = alignment.findAllGroups( seq );
\r
{
\r
seq = alignment.getSequenceAt(i);
\r
groups = alignment.findAllGroups( seq );
\r
- out.println("<tr><td nowrap>"+seq.getDisplayId()+" </td>");
\r
+ if(av.getShowFullId())
\r
+ out.println("<tr><td nowrap>"+seq.getDisplayId()+" </td>");
\r
+ else
\r
+ out.println("<tr><td nowrap>"+seq.getName()+" </td>");
\r
+
\r
\r
\r
for (int res = 0; res < seq.getLength(); res++)
\r
\r
\r
for (int res = 0; res < seq.getLength(); res++)
\r
@@
-172,7
+178,10
@@
public class HTMLOutput
out.println("<tr>");
\r
seq = al.getSequenceAt(s);
\r
groups = al.findAllGroups( seq );
\r
out.println("<tr>");
\r
seq = al.getSequenceAt(s);
\r
groups = al.findAllGroups( seq );
\r
- out.println("<td nowrap>"+seq.getDisplayId()+" </td>");
\r
+ if(av.getShowFullId())
\r
+ out.println("<td nowrap>"+seq.getDisplayId()+" </td>");
\r
+ else
\r
+ out.println("<td nowrap>"+seq.getName()+" </td>");
\r
\r
for (int res = startRes; res < endRes; res++)
\r
{
\r
\r
for (int res = startRes; res < endRes; res++)
\r
{
\r