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reset colours added
[jalview.git]
/
src
/
jalview
/
io
/
IdentifyFile.java
diff --git
a/src/jalview/io/IdentifyFile.java
b/src/jalview/io/IdentifyFile.java
index
2baf323
..
18e1a6a
100755
(executable)
--- a/
src/jalview/io/IdentifyFile.java
+++ b/
src/jalview/io/IdentifyFile.java
@@
-15,7
+15,7
@@
public class IdentifyFile
{
\r
public static String Identify(String file, String protocol)
\r
{
\r
{
\r
public static String Identify(String file, String protocol)
\r
{
\r
- String reply = "error";
\r
+ String reply = "PFAM";
\r
try{
\r
\r
BufferedReader reader = null;
\r
try{
\r
\r
BufferedReader reader = null;
\r
@@
-56,23
+56,17
@@
public class IdentifyFile
reply = "PIR";
\r
break;
\r
}
\r
reply = "PIR";
\r
break;
\r
}
\r
- else if(data.indexOf(">")==0)
\r
+ else if(data.indexOf(">")>-1)
\r
{
\r
{
\r
- // could be BLC file
\r
+ // could be BLC file, read next line to confirm
\r
data = reader.readLine();
\r
data = reader.readLine();
\r
- if(data.indexOf(">")==0)
\r
+ if(data.indexOf(">")>-1)
\r
reply = "BLC";
\r
else
\r
reply = "FASTA";
\r
\r
break;
\r
}
\r
reply = "BLC";
\r
else
\r
reply = "FASTA";
\r
\r
break;
\r
}
\r
- else
\r
- {
\r
- reply = "PFAM";
\r
- break;
\r
- }
\r
-
\r
}
\r
reader.close();
\r
}
\r
}
\r
reader.close();
\r
}
\r