- Vector values = (Vector)scores.get("JNETPROPH");\r
- annotations = new Annotation[al.getWidth()];\r
- for (int j = 0; j < al.getWidth(); j++)\r
- {\r
- float value = Float.parseFloat(values.get(j).toString());\r
- annotations[j] = new Annotation("", value+"",' ',value);\r
- }\r
- annot = new AlignmentAnnotation("Jnetproph", "Jpred Output", annotations, 0f,1f,1);\r
- al.addAnnotation(annot);\r
-\r
- values = (Vector)scores.get("JNETPROPB");\r
- annotations = new Annotation[al.getWidth()];\r
- for (int j = 0; j < al.getWidth(); j++)\r
- {\r
- float value = Float.parseFloat(values.get(j).toString());\r
- annotations[j] = new Annotation("", value+"",' ',value);\r
- }\r
- annot = new AlignmentAnnotation("JnetpropB", "Jpred Output", annotations, 0f,1f,1);\r
- al.addAnnotation(annot);\r
-\r
- values = (Vector)scores.get("JNETPROPC");\r
- annotations = new Annotation[al.getWidth()];\r
- for (int j = 0; j < al.getWidth(); j++)\r
- {\r
- float value = Float.parseFloat(values.get(j).toString());\r
- annotations[j] = new Annotation("", value+"",' ',value);\r
- }\r
- annot = new AlignmentAnnotation("JnetpropC", "Jpred Output", annotations, 0f,1f,1);\r
- al.addAnnotation(annot);\r
-\r
+ addFloatAnnotations(al, gapmap, (Vector)scores.get("JNETPROPB"),\r
+ "JnetpropB", "Jnet Beta Sheed Propensity", 0f,1f,1);\r