* Parser for the JPred/JNet concise format. This is a series of CSV lines, each
/**
* Parser for the JPred/JNet concise format. This is a series of CSV lines, each
@@ -293,9+294,7 @@ public class JPredFile extends AlignFile
if (maxLength != seq_entries.elementAt(i).toString().length())
{
if (maxLength != seq_entries.elementAt(i).toString().length())
{
- throw new IOException("JPredConcise: Entry ("
- + ids.elementAt(i).toString()
- + ") has an unexpected number of columns");
+ throw new IOException(MessageManager.formatMessage("exception.jpredconcide_entry_has_unexpected_number_of_columns", new String[]{ids.elementAt(i).toString()}));
}
if ((newSeq.getName().startsWith("QUERY") || newSeq.getName()
}
if ((newSeq.getName().startsWith("QUERY") || newSeq.getName()
@@ -319,9+318,7 @@ public class JPredFile extends AlignFile
} catch (Exception e)
{
tal = null;
} catch (Exception e)
{
tal = null;
- IOException ex = new IOException(
- "Couldn't parse concise annotation for prediction profile.\n"
- + e);
+ IOException ex = new IOException(MessageManager.formatMessage("exception.couldnt_parse_concise_annotation_for_prediction", new String[]{e.getMessage()}));