- if (id.equals("JNETCONF"))
- {
- annot = new AlignmentAnnotation(preds[i].getName(),
- "JNet Output", annotations, 0f, 10f,
- AlignmentAnnotation.BAR_GRAPH);
- }
- else
- {
- annot = new AlignmentAnnotation(preds[i].getName(),
- "JNet Output", annotations);
- }
-
- if (seqRef != null)
- {
- annot.createSequenceMapping(seqRef, 1, true);
- seqRef.addAlignmentAnnotation(annot);
- }
+ if (id.equals("JNETCONF"))
+ {
+ annot = new AlignmentAnnotation(preds[i].getName(),
+ "JPred Output", annotations, 0f, 10f,
+ AlignmentAnnotation.BAR_GRAPH);
+ }
+ else
+ {
+ annot = new AlignmentAnnotation(preds[i].getName(),
+ "JPred Output", annotations);
+ }