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Merge branch 'develop' into feature/r2_11_2/JAL-3808_gff2_exonerate
[jalview.git]
/
src
/
jalview
/
io
/
MSFfile.java
diff --git
a/src/jalview/io/MSFfile.java
b/src/jalview/io/MSFfile.java
index
df2bed2
..
e954703
100755
(executable)
--- a/
src/jalview/io/MSFfile.java
+++ b/
src/jalview/io/MSFfile.java
@@
-20,6
+20,8
@@
*/
package jalview.io;
*/
package jalview.io;
+import java.util.Locale;
+
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
import jalview.util.Comparison;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
import jalview.util.Comparison;
@@
-184,7
+186,7
@@
public class MSFfile extends AlignFile
public int checkSum(String seq)
{
int check = 0;
public int checkSum(String seq)
{
int check = 0;
- String sequence = seq.toUpperCase();
+ String sequence = seq.toUpperCase(Locale.ROOT);
for (int i = 0; i < sequence.length(); i++)
{
for (int i = 0; i < sequence.length(); i++)
{