- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
SequenceI[] s = new SequenceI[seqs.length];
StringBuffer out = new StringBuffer("!!" + (is_NA ? "NA" : "AA")
SequenceI[] s = new SequenceI[seqs.length];
StringBuffer out = new StringBuffer("!!" + (is_NA ? "NA" : "AA")
{
// Replace all internal gaps with . and external spaces with ~
s[i] = new Sequence(seqs[i].getName(), seqs[i].getSequenceAsString()
{
// Replace all internal gaps with . and external spaces with ~
s[i] = new Sequence(seqs[i].getName(), seqs[i].getSequenceAsString()
long maxNB = 0;
out.append(" MSF: " + s[0].getSequence().length + " Type: "
+ (is_NA ? "N" : "P") + " Check: " + (bigChecksum % 10000)
long maxNB = 0;
out.append(" MSF: " + s[0].getSequence().length + " Type: "
+ (is_NA ? "N" : "P") + " Check: " + (bigChecksum % 10000)