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JAL-3691 toUpperCase(Locale.ROOT) for all standard file format operations
[jalview.git]
/
src
/
jalview
/
io
/
MSFfile.java
diff --git
a/src/jalview/io/MSFfile.java
b/src/jalview/io/MSFfile.java
index
df2bed2
..
db29848
100755
(executable)
--- a/
src/jalview/io/MSFfile.java
+++ b/
src/jalview/io/MSFfile.java
@@
-29,6
+29,7
@@
import java.io.IOException;
import java.util.ArrayList;
import java.util.Hashtable;
import java.util.List;
import java.util.ArrayList;
import java.util.Hashtable;
import java.util.List;
+import java.util.Locale;
import java.util.StringTokenizer;
/**
import java.util.StringTokenizer;
/**
@@
-184,7
+185,7
@@
public class MSFfile extends AlignFile
public int checkSum(String seq)
{
int check = 0;
public int checkSum(String seq)
{
int check = 0;
- String sequence = seq.toUpperCase();
+ String sequence = seq.toUpperCase(Locale.ROOT);
for (int i = 0; i < sequence.length(); i++)
{
for (int i = 0; i < sequence.length(); i++)
{