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JAL-2656 recognise non-HTTP URI input streams as gzipped by detecting the gzip magic...
[jalview.git]
/
src
/
jalview
/
io
/
ModellerDescription.java
diff --git
a/src/jalview/io/ModellerDescription.java
b/src/jalview/io/ModellerDescription.java
index
7e05b15
..
a56f2af
100755
(executable)
--- a/
src/jalview/io/ModellerDescription.java
+++ b/
src/jalview/io/ModellerDescription.java
@@
-25,6
+25,8
@@
import jalview.datamodel.SequenceI;
import java.util.List;
import java.util.List;
+import com.stevesoft.pat.Regex;
+
public class ModellerDescription
{
/**
public class ModellerDescription
{
/**
@@
-88,7
+90,7
@@
public class ModellerDescription
resCode(int v)
{
resCode(int v)
{
- val = new Integer(v);
+ val = Integer.valueOf(v);
field = val.toString();
}
};
field = val.toString();
}
};
@@
-96,7
+98,7
@@
public class ModellerDescription
private resCode validResidueCode(String field)
{
Integer val = null;
private resCode validResidueCode(String field)
{
Integer val = null;
- com.stevesoft.pat.Regex r = new com.stevesoft.pat.Regex(
+ Regex r = new Regex(
"\\s*((([-0-9]+).?)|FIRST|LAST|@)");
if (!r.search(field))
"\\s*((([-0-9]+).?)|FIRST|LAST|@)");
if (!r.search(field))