git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
file format enum wip changes
[jalview.git]
/
src
/
jalview
/
io
/
NewickFile.java
diff --git
a/src/jalview/io/NewickFile.java
b/src/jalview/io/NewickFile.java
index
ab3c37c
..
765ea95
100755
(executable)
--- a/
src/jalview/io/NewickFile.java
+++ b/
src/jalview/io/NewickFile.java
@@
-110,7
+110,7
@@
public class NewickFile extends FileParse
*/
public NewickFile(String inStr) throws IOException
{
*/
public NewickFile(String inStr) throws IOException
{
- super(inStr, "Paste");
+ super(inStr, DataSourceType.PASTE);
}
/**
}
/**
@@
-118,15
+118,16
@@
public class NewickFile extends FileParse
*
* @param inFile
* DOCUMENT ME!
*
* @param inFile
* DOCUMENT ME!
- * @param type
+ * @param protocol
* DOCUMENT ME!
*
* @throws IOException
* DOCUMENT ME!
*/
* DOCUMENT ME!
*
* @throws IOException
* DOCUMENT ME!
*/
- public NewickFile(String inFile, String type) throws IOException
+ public NewickFile(String inFile, DataSourceType protocol)
+ throws IOException
{
{
- super(inFile, type);
+ super(inFile, protocol);
}
public NewickFile(FileParse source) throws IOException
}
public NewickFile(FileParse source) throws IOException
@@
-966,7
+967,7
@@
public class NewickFile extends FileParse
treefile.close();
System.out.println("Read file :\n");
treefile.close();
System.out.println("Read file :\n");
- NewickFile trf = new NewickFile(args[0], "File");
+ NewickFile trf = new NewickFile(args[0], DataSourceType.FILE);
trf.parse();
System.out.println("Original file :\n");
trf.parse();
System.out.println("Original file :\n");