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JAL-3820 JAL-4189 Move checks for java executable symlinks to LaunchUtils ready for...
[jalview.git]
/
src
/
jalview
/
io
/
NewickFile.java
diff --git
a/src/jalview/io/NewickFile.java
b/src/jalview/io/NewickFile.java
index
67923db
..
b3c0011
100755
(executable)
--- a/
src/jalview/io/NewickFile.java
+++ b/
src/jalview/io/NewickFile.java
@@
-26,20
+26,20
@@
// TODO: Extended SequenceNodeI to hold parsed NHX strings
package jalview.io;
// TODO: Extended SequenceNodeI to hold parsed NHX strings
package jalview.io;
-import java.util.Locale;
-
-import jalview.datamodel.BinaryNode;
-import jalview.datamodel.SequenceNode;
-import jalview.util.MessageManager;
-
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.IOException;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.IOException;
+import java.util.Locale;
import java.util.StringTokenizer;
import com.stevesoft.pat.Regex;
import java.util.StringTokenizer;
import com.stevesoft.pat.Regex;
+import jalview.bin.Jalview;
+import jalview.datamodel.BinaryNode;
+import jalview.datamodel.SequenceNode;
+import jalview.util.MessageManager;
+
/**
* Parse a new hanpshire style tree Caveats: NHX files are NOT supported and the
* tree distances and topology are unreliable when they are parsed. TODO: on
/**
* Parse a new hanpshire style tree Caveats: NHX files are NOT supported and the
* tree distances and topology are unreliable when they are parsed. TODO: on
@@
-946,9
+946,8
@@
public class NewickFile extends FileParse
{
if (args == null || args.length != 1)
{
{
if (args == null || args.length != 1)
{
- System.err.println(
- "Takes one argument - file name of a newick tree file.");
- System.exit(0);
+ Jalview.exit(
+ "Takes one argument - file name of a newick tree file.", 0);
}
File fn = new File(args[0]);
}
File fn = new File(args[0]);