+ // modeller doesn't really do nucleotides, so we don't do anything fancy\r
+ // Nucleotide sequence tags should have a >DL; prefix\r
+ out.append(">N1;" + s[i].getName() + "\n"); // JBPNote Should change >P to >N\r
+ if (s[i].getDescription() == null)\r
+ {\r
+ out.append(s[i].getName() + " " +\r
+ (s[i].getEnd() - s[i].getStart() + 1));\r
+ out.append(is_NA ? " bases\n" : " residues\n");\r
+ }\r
+ else\r
+ {\r
+ out.append(s[i].getDescription()+"\n");\r
+ }\r