- out.append(">P1;" + s[i].getName() + "\n");\r
- ModellerDescription md = new ModellerDescription(s[i]);\r
- out.append(md.getDescriptionLine() + "\n");\r
+\r
+ if(useModellerOutput)\r
+ {\r
+ out.append(">P1;" + s[i].getName() + "\n");\r
+ md = new ModellerDescription(s[i]);\r
+ out.append(md.getDescriptionLine() + "\n");\r
+ }\r
+ else\r
+ {\r
+ out.append(">P1;" + printId(s[i]) + "\n");\r
+ if (s[i].getDescription() != null)\r
+ out.append(s[i].getDescription() + "\n");\r
+ else\r
+ out.append(s[i].getName() + " "\r
+ + (s[i].getEnd() - s[i].getStart() + 1)\r
+ + " residues\n");\r
+ }\r