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use 1 & -1 if start/end not specified
[jalview.git]
/
src
/
jalview
/
io
/
PileUpfile.java
diff --git
a/src/jalview/io/PileUpfile.java
b/src/jalview/io/PileUpfile.java
index
c200c5e
..
728d1c6
100755
(executable)
--- a/
src/jalview/io/PileUpfile.java
+++ b/
src/jalview/io/PileUpfile.java
@@
-131,7
+131,7
@@
public class PileUpfile
String seq = seqhash.get(head).toString();
\r
\r
int start = 1;
\r
String seq = seqhash.get(head).toString();
\r
\r
int start = 1;
\r
- int end = seq.length();
\r
+ int end = -1;
\r
\r
if (maxLength < head.length())
\r
{
\r
\r
if (maxLength < head.length())
\r
{
\r