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JAL-4290 new CommandsTest.headlessOrGuiImageOutputTest - uses CommandLineOperations...
[jalview.git]
/
src
/
jalview
/
io
/
PileUpfile.java
diff --git
a/src/jalview/io/PileUpfile.java
b/src/jalview/io/PileUpfile.java
index
4a0885c
..
ede258e
100755
(executable)
--- a/
src/jalview/io/PileUpfile.java
+++ b/
src/jalview/io/PileUpfile.java
@@
-92,8
+92,8
@@
public class PileUpfile extends MSFfile
i++;
}
i++;
}
- out.append(" MSF: " + s[0].getLength()
- + " Type: P Check: " + bigChecksum % 10000 + " ..");
+ out.append(" MSF: " + s[0].getLength() + " Type: P Check: "
+ + bigChecksum % 10000 + " ..");
out.append(newline);
out.append(newline);
out.append(newline);
out.append(newline);
out.append(newline);
out.append(newline);
@@
-103,8
+103,8
@@
public class PileUpfile extends MSFfile
{
String seq = s[i].getSequenceAsString();
out.append(" Name: " + printId(s[i], jvsuffix) + " oo Len: "
{
String seq = s[i].getSequenceAsString();
out.append(" Name: " + printId(s[i], jvsuffix) + " oo Len: "
- + seq.length()
- + " Check: " + checksums[i] + " Weight: 1.00");
+ + seq.length() + " Check: " + checksums[i]
+ + " Weight: 1.00");
out.append(newline);
if (seq.length() > max)
out.append(newline);
if (seq.length() > max)