git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-2041 add ID,clinical_significance to feature attributes (for export)
[jalview.git]
/
src
/
jalview
/
io
/
SequenceAnnotationReport.java
diff --git
a/src/jalview/io/SequenceAnnotationReport.java
b/src/jalview/io/SequenceAnnotationReport.java
index
8469355
..
2d76d6b
100644
(file)
--- a/
src/jalview/io/SequenceAnnotationReport.java
+++ b/
src/jalview/io/SequenceAnnotationReport.java
@@
-23,6
+23,7
@@
package jalview.io;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
+import jalview.io.gff.GffConstants;
import jalview.util.DBRefUtils;
import jalview.util.UrlLink;
import jalview.util.DBRefUtils;
import jalview.util.UrlLink;
@@
-175,7
+176,8
@@
public class SequenceAnnotationReport
{
sb.append("; (").append(status).append(")");
}
{
sb.append("; (").append(status).append(")");
}
- String clinSig = (String) feature.getValue("clinical_significance");
+ String clinSig = (String) feature
+ .getValue(GffConstants.CLINICAL_SIGNIFICANCE);
if (clinSig != null)
{
sb.append("; ").append(clinSig);
if (clinSig != null)
{
sb.append("; ").append(clinSig);