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file format enum wip changes
[jalview.git]
/
src
/
jalview
/
io
/
StockholmFile.java
diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
23c4d21
..
813b184
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-91,9
+91,10
@@
public class StockholmFile extends AlignFile
this.al = al;
}
this.al = al;
}
- public StockholmFile(String inFile, String type) throws IOException
+ public StockholmFile(String inFile, DataSourceType sourceType)
+ throws IOException
{
{
- super(inFile, type);
+ super(inFile, sourceType);
}
public StockholmFile(FileParse source) throws IOException
}
public StockholmFile(FileParse source) throws IOException
@@
-101,6
+102,7
@@
public class StockholmFile extends AlignFile
super(source);
}
super(source);
}
+ @Override
public void initData()
{
super.initData();
public void initData()
{
super.initData();
@@
-178,6
+180,7
@@
public class StockholmFile extends AlignFile
* @throws IOException
* If there is an error with the input file
*/
* @throws IOException
* If there is an error with the input file
*/
+ @Override
public void parse() throws IOException
{
StringBuffer treeString = new StringBuffer();
public void parse() throws IOException
{
StringBuffer treeString = new StringBuffer();
@@
-1106,6
+1109,7
@@
public class StockholmFile extends AlignFile
return seq;
}
return seq;
}
+ @Override
public String print()
{
out = new StringBuffer();
public String print()
{
out = new StringBuffer();