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Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
[jalview.git]
/
src
/
jalview
/
io
/
StructureFile.java
diff --git
a/src/jalview/io/StructureFile.java
b/src/jalview/io/StructureFile.java
index
40bb8be
..
3025907
100644
(file)
--- a/
src/jalview/io/StructureFile.java
+++ b/
src/jalview/io/StructureFile.java
@@
-397,8
+397,10
@@
public abstract class StructureFile extends AlignFile
public static boolean isRNA(SequenceI seq)
{
public static boolean isRNA(SequenceI seq)
{
- for (char c : seq.getSequence())
+ int length = seq.getLength();
+ for (int i = 0; i < length; i++)
{
{
+ char c = seq.getCharAt(i);
if ((c != 'A') && (c != 'C') && (c != 'G') && (c != 'U'))
{
return false;
if ((c != 'A') && (c != 'C') && (c != 'G') && (c != 'U'))
{
return false;