+ public void addSettings(boolean addAlignmentAnnotations,
+ boolean predictSecondaryStructure, boolean externalSecStr)
+ {
+ this.visibleChainAnnotation = addAlignmentAnnotations;
+ this.predictSecondaryStructure = predictSecondaryStructure;
+ this.externalSecondaryStructure = externalSecStr;
+ }
+
+ public void xferSettings()
+ {
+ this.visibleChainAnnotation = StructureViewSettings
+ .isVisibleChainAnnotation();
+ this.predictSecondaryStructure = StructureViewSettings
+ .isPredictSecondaryStructure();
+ this.externalSecondaryStructure = StructureViewSettings
+ .isExternalSecondaryStructure();
+
+ }
+